Software
The core facility uses a number of different applications for the data analysis, including Affymetrix software and Illumina software. We also use freeware like R / Bioconductor and various online resources. The commercial applications we are currently using are listed below.
| Partek Genomic Suite Partek GS is a comprehensive suite of advanced statistics and interactive data visualization. It is supporting all microarray and next generation sequencing technologies including DGE and gene expression, RNA-seq and alternative splicing, copy number and association, ChIP-chip, ChIP-seq, and microRNA. |
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| XRAY XRAY is an add-in for Microsoft Excel that finds significant gene expression level and alternative splicing differences between biological states. Analysis of tiling arrays are also supported. |
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| Qlucore Omics Explorer Provides a tool to visualize and explore large microarray and real-time PCR data sets such as gene expression, microRNA, DNA methylation, protein expression and any multivariate data of size up to 1000 x 100,000. |
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- Order Forms:
- Price Lists:
- Resources:
| Microarray Services |  |  |
| Affymetrix Arrays (non-KI) |  | |
| Illumina Arrays | ||
| Bioinformatics Order Form | | |
| Affymetrix Arrays | | |
| Affymetrix Service Fees | | |
| Illumina Prices & Service Fees | | |
| qRT-PCR Prices & Serv. Fees | |
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