Reference List
Below is a collection of references that could be useful to the customer. If you would like to have your article invluded. Please contact the core facility.
Tiling / ChiP on CHIP references :
Tiling / ChiP on CHIP references : |
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Ekwall K. |
| Genome-wide analysis of HDAC function. | |
| Trends Genet. 2005 Nov;21(11):608-15. Epub 2005 Sep 8. Review |
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Sinha I, Wiren M, Ekwall K. |
| Genome-wide patterns of histone modifications in fission yeast. | |
| Chromosome Res. 2006;14(1):95-105. |
Genotyping references: |
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Bruce SK, Leinonen R, Lindgren CM, Kivinen K, Dahlman-Wright K, Lipsanen-Nyman M, Hannula-Jouppi K, Kere J. |
| Global analysis of uniparental disomy using high-density genotyping arrays. | |
| J Med Genet. 2005 May 6. |
Expression references: |
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Arlinde, C, Sommer, W, Björk, K, Reimers M, Hyytiä, P, Kiianmaa, K, and Heilig, M. |
| A cluster of differentially expressed signal transduction genes identified by microarray analysis in a rat genetic model of alcoholism. | |
| The Pharmacogenomics Journal, 2004, 4:3, pp 208-218 |
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Birgersdotter A, Sandberg R, Ernberg I. |
| Gene expression perturbation in vitro--a growing case for three-dimensional (3D) culture systems. | |
| Semin Cancer Biol. 2005 Oct;15(5):405-12. |
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Bladh LG, Liden J, Dahlman-Wright K, Reimers M, Nilsson S, Okret S. |
| Identification of endogenous glucocorticoid repressed genes differentially regulated by a glucocorticoid receptor mutant able to separate between nuclear factor-kappaB and activator protein-1 repression. | |
| Mol Pharmacol. 2005 Mar;67(3):815-26. Epub 2004 Nov 18. |
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Bladh LG, Liden J, Pazirandeh A, Rafter I, Dahlman-Wright K, Nilsson S, Okret S. |
| Identification of target genes involved in the anti-proliferative effect of glucocorticoids reveals a role for nuclear factor-{kappa}B repression. | |
| Mol Endocrinol. 2004 Nov 4 |
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Bryzgalova G, Gao H, Ahren B, Zierath JR, Galuska D, Steiler TL, Dahlman-Wright K, Nilsson S, Gustafsson JA, Efendic S, Khan A. |
| Evidence that oestrogen receptor-alpha plays an important role in the regulation of glucose homeostasis in mice: insulin sensitivity in the liver. | |
| Diabetologia. 2006 Mar;49(3):588-97. Epub 2006 Feb 4. |
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Dahlman I, Linder K, Arvidsson Nordström E, Andersson I, Lidén J, Verdich C, Sørensen T.I.A, Arner P |
| Changes in adipose tissue gene expression by energy-restricted diets in obese women | |
| Am J Clin Nutr. 2005 Jun;81(6):1275-85. |
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Dahlman I, Forsgren M, Sjogren A, Nordstrom EA, Kaaman M, Naslund E, Attersand A, Arner P. |
| Downregulation of Electron Transport Chain Genes in Visceral Adipose Tissue in Type 2 Diabetes Independent of Obesity and Possibly Involving Tumor Necrosis Factor-{alpha}. | |
| Diabetes. 2006 Jun;55(6):1792-9 |
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Dressler D, Sarang Z, Szondy Z, Engelhart K, Grafstrom RC. |
| Expression of retinoid-related genes in serum-free cultures of normal, immortalized and malignant human oral keratinocytes. | |
| Int J Oncol. 2002 May;20(5):897-903. |
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Elomaa O, Majuri I, Suomela S, Asumalahti K, Jiao H, Mirzaei Z, Rozell B, Dahlman-Wright K, Pispa J, Kere J, Saarialho-Kere U. |
| Transgenic mouse models support HCR as an effector gene in the PSORS1 locus. | |
| Hum Mol Genet. 2004 Aug 1;13(15):1551-61. Epub 2004 Jun 9. |
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Falt S, Merup M, Gahrton G, Lambert B, Wennborg A. |
| Identification of progression markers in B-CLL by gene expression profiling. | |
| Exp Hematol. 2005 Aug;33(8):883-93. |
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Falt S, Holmberg K, Lambert B, Wennborg A. |
| Long-term global gene expression patterns in irradiated human lymphocytes. | |
| Carcinogenesis. 2003 Nov;24(11):1837-45. Epub 2003 Sep 01. |
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Falt S, Merup M, Tobin G, Thunberg U, Gahrton G, Rosenquist R, Wennborg A. |
| Distinctive gene expression pattern in VH3-21 utilizing B-cell chronic lymphocytic leukemia. | |
| Blood. 2005 Jul 15;106(2):681-9. Epub 2005 Apr 7. |
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Forsberg L, Björck E, Hashemi J, Zedenius J, Höög A, Farnebo L-O, Reimers M, Larsson C |
| Distinction in gene expression profiles demonstrated in parathyroid adenomas by high-density oligoarray technology. | |
| European Journal of Endocrinology 152:459-470, 2005. |
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Gao H, Bryzgalova G, Hedman E, Khan A, Efendic S, Gustafsson JA, Dahlman-Wright K. |
| Long-term administration of estradiol decreases expression of hepatic lipogenic genes and improves insulin sensitivity in ob/ob mice: a possible mechanism is through direct regulation of signal transducer and activator of transcription 3. | |
| Mol Endocrinol. 2006 Jun;20(6):1287-99. Epub 2006 Apr 20. |
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Glenmark B, Nilsson M, Gao H, Gustafsson JA, Dahlman-Wright K, Westerblad H. |
| Difference in skeletal muscle function in males vs females; role of estrogen receptor {beta} | |
| Am J Physiol Endocrinol Metab. 2004 Jul 27. |
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Hallberg M, Polozkov GV, Hu GZ, Beve J, Gustafsson CM, Ronne H, Bjorklund S. |
| Site-specific Srb10-dependent phosphorylation of the yeast Mediator subunit Med2 regulates gene expression from the 2-microm plasmid. | |
| Proc Natl Acad Sci U S A. 2004 Mar 9;101(10):3370-5. Epub 2004 Feb 26. |
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Islam TC, Asplund AC, Lindvall JM, Nygren L, Liden J, Kimby E, Christensson B, Smith CI, Sander B. |
| High level of cannabinoid receptor 1, absence of regulator of G protein signalling 13 and differential expression of Cyclin D1 in mantle cell lymphoma. | |
| Leukemia. 2003 Sep;17(9):1880-90. |
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Lindberg MK, Moverare S, Skrtic S, Gao H, Dahlman-Wright K, Gustafsson JA, Ohlsson C. |
| Estrogen receptor (ER)-beta reduces ERalpha-regulated gene transcription, supporting a "ying yang" relationship between ERalpha and ERbeta in mice. | |
| Mol Endocrinol. 2003 Feb;17(2):203-8. |
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Lindberg MK, Weihua Z, Andersson N, Moverare S, Gao H, Vidal O, Erlandsson M, Windahl S, Andersson G, Lubahn DB, Carlsten H, Dahlman-Wright K, Gustafsson JA, Ohlsson C. |
| Estrogen receptor specificity for the effects of estrogen in ovariectomized mice. | |
| J Endocrinol. 2002 Aug;174(2):167-78. |
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Lindberg MK, Moverare S, Eriksson AL, Skrtic S, Gao H, Dahlman-Wright K, Gustafsson JA, Ohlsson C. |
| Identification of estrogen-regulated genes of potential importance for the regulation of trabecular bone mineral density. | |
| J Bone Miner Res. 2002 Dec;17(12):2183-95. |
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Lindvall JM, Blomberg KE, Wennborg A, Smith CI. |
| Differential expression and molecular characterisation of Lmo7, Myo1e, Sash1, and Mcoln2 genes in Btk-defective B-cells. | |
| Cell Immunol. 2005 May;235(1):46-55. Epub 2005 Aug 30. |
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Lindvall JM, Blomberg KE, Valiaho J, Vargas L, Heinonen JE, Berglof A, Mohamed AJ, Nore BF, Vihinen M, Smith CI. |
| Bruton's tyrosine kinase: cell biology, sequence conservation, mutation spectrum, siRNA modifications, and expression profiling. | |
| Immunol Rev. 2005 Feb;203:200-15. Review. |
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Lindvall JM, Blomberg KE, Berglof A, Yang Q, Smith CI, Islam TC. |
| Gene expression profile of B cells from Xid mice and Btk knockout mice. | |
| Eur J Immunol. 2004 Jul;34(7):1981-91. |
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Lui WO, Foukakis T, Liden J, Thoppe SR, Dwight T, Hoog A, Zedenius J, Wallin G, Reimers M, Larsson C. |
| Expression profiling reveals a distinct transcription signature in follicular thyroid carcinomas with a PAX8-PPARgamma fusion oncogene. | |
| Oncogene, 24: 1467-1476, 2005 |
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Lundgren J, Masson P, Mirzaei Z, Young P. |
| Identification and characterization of a Drosophila proteasome regulatory network. | |
| Mol Cell Biol. 2005 Jun;25(11):4662-75. |
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Lundholm L, Moverare S, Steffensen KR, Nilsson M, Otsuki M, Ohlsson C, Gustafsson JA, Dahlman-Wright K. |
| Gene expression profiling identifies liver X receptor alpha as an estrogen-regulated gene in mouse adipose tissue. | |
| J Mol Endocrinol. 2004 Jun;32(3):879-92. |
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Ohlson J, Enstero M, Sjoberg BM, Ohman M. |
| A method to find tissue-specific novel sites of selective adenosine deamination. | |
| Nucleic Acids Res. 2005 Oct 27;33(19):e167. |
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Orre LM, Falt S, Szeles A, Lewensohn R, Wennborg A, Flygare J. |
| Rad51-related changes in global gene expression. | |
| Biochem Biophys Res Commun. 2006 Mar 10;341(2):334-42. Epub 2006 Jan 18. |
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Otsuki M, Gao H, Dahlman-Wright K, Ohlsson C, Eguchi N, Urade Y, Gustafsson JA. |
| Specific regulation of lipocalin-type prostaglandin D synthase in mouse heart by estrogen receptor beta. | |
| Mol Endocrinol. 2003 Sep;17(9):1844-55. Epub 2003 Jun 26. |
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Rimondini, R, Arlinde, C, Sommer, W, Heilig, M |
| Long-lasting increase in voluntary ethanol consumption and transcriptional regulation in the rat brain after intermittent exposure to alcohol. | |
| The FASEB Journal, 16, pp 27-35, 2002. |
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Roxstrom-Lindquist K, Terenius O, Faye I. |
| Parasite-specific immune response in adult Drosophila melanogaster: a genomic study. | |
| EMBO Rep. 2004 Feb;5(2):207-12. Epub 2004 Jan 23. |
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Rück A, Gustafsson T, Norrbom J, Nowak J, Källner G, Söderberg M, Sylvén C, Drvota V. |
| ANP and BNP but not VEGF are regionally overexpressed in ischemic human myocardium | |
| Biochemical and Biophysical Research Communications 322 (2004) 287–291 |
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Sander B, Flygare J, Porwit-Macdonald A, Smith CI, Emanuelsson E, Kimby E, Liden J, Christensson B. |
| Mantle cell lymphomas with low levels of cyclin D1 long mRNA transcripts are highly proliferative and can be discriminated by elevated cyclin A2 and cyclin B1. | |
| Int J Cancer. 2005 Nov 10;117(3):418-30. |
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Sommer W, Arlinde C, Caberlotto L, Thorsell A, Hyytia P, Heilig M. |
| Differential expression of diacylglycerol kinase iota and L18A mRNA in the brains of alcohol-preferring AA and alcohol-avoiding ANA rats. | |
| Molecular Psychiatry, 6, pp 103-108, 2001. |
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Sommer W, Arlinde C, Heilig M. |
| The search for candidate genes of alcoholism: evidence from expression profiling studies. | |
| Addict Biol. 2005 Mar;10(1):71-9. Review |
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Stulnig TM, Steffensen KR, Gao H, Reimers M, Dahlman-Wright K, Schuster GU, Gustafsson JA. |
| Novel roles of liver X receptors exposed by gene expression profiling in liver and adipose tissue. | |
| Mol Pharmacol. 2002 Dec;62(6):1299-305. |
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Timmons JA, Larsson O, Jansson E, Fischer H, Gustafsson T, Greenhaff PL, Ridden J, Rachman J, Peyrard-Janvid M, Wahlestedt C, Sundberg CJ. |
| Human muscle gene expression responses to endurance training provide a novel perspective on Duchenne muscular dystrophy. | |
| FASEB J. 2005 May;19(7):750-60. |
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Zhu X, Wiren M, Sinha I, Rasmussen NN, Linder T, Holmberg S, Ekwall K, Gustafsson CM. |
| Genome-wide occupancy profile of mediator and the Srb8-11 module reveals interactions with coding regions. | |
| Mol Cell. 2006 Apr 21;22(2):169-78. |
Publications not from BEA : |
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John S, Shephard N, Liu G, Zeggini E, Cao M, Chen W, Vasavda N, Mills T, Barton A, Hinks A, Eyre S, Jones KW, Ollier W, Silman A, Gibson N, Worthington J, Kennedy GC. |
| Whole-Genome Scan, in a Complex Disease, Using 11,245 Single-Nucleotide Polymorphisms: Comparison with Microsatellites | |
| Am. J. Hum. Genet. 75:54–64, 2004 |
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Middleton FA, Pato MT, Gentile KL, Morley CP, Zhao X, Eisener AF, Brown A, Petryshen TL, Kirby AN, Medeiros H, Carvalho C, Macedo A, Dourado A, Coelho I, Valente J, Soares MJ, Ferreira CP, Lei M, Azevedo MH, Kennedy JL, Daly MJ, Sklar P, Pato CN. |
| Genomewide Linkage Analysis of Bipolar Disorder by Use of a High-Density Single-Nucleotide–Polymorphism (SNP) Genotyping Assay: A Comparison with Microsatellite Marker Assays and Finding of Significant Linkage to Chromosome 6q22 | |
| Am. J. Hum. Genet. 74:886–897, 2004 |
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Schaid DJ, Guenther JC, Christensen GB, Hebbring S, Rosenow C, Hilker CA, McDonnell SK, Cunningham JM, Slager SL, Blute ML, Thibodeau SN. |
| Comparison of microsatellites versus single-nucleotide polymorphisms in a genome linkage screen for prostate cancer-susceptibility Loci. | |
| Am J Hum Genet. 2004 Dec;75(6):948-65. Epub 2004 Oct 8. |
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