Reference List

Below is a collection of references that could be useful to the customer. If you would like to have your article invluded, please contact the core facility.


Algovik M, Kivinen K, Peterson H, Westgren M, Kere J. Genetic evidence ofmultiple loci in dystocia--difficult labour. BMC Med Genet. 2010 Jun 30;11:105.PubMed PMID: 20587075; PubMed Central PMCID: PMC2914646.

Birgersdotter A, Baumforth KR, Porwit A, Sjöberg J, Wei W, Björkholm M, Murray PG, Ernberg I. Inflammation and tissue repair markers distinguish the nodular sclerosis and mixed cellularity subtypes of classical Hodgkin's lymphoma. Br J Cancer. 2009 Oct 20;101(8):1393-401. Epub 2009 Sep 22. PubMed PMID: 19773754; PubMed Central PMCID: PMC2768440.

Birgersdotter A, Baumforth KR, Wei W, Murray PG, Sjöberg J, Björkholm M, Porwit A, Ernberg I. Connective tissue growth factor is expressed in malignant cells of Hodgkin lymphoma but not in other mature B-cell lymphomas. Am J ClinPathol. 2010 Feb;133(2):271-80. PubMed PMID: 20093237.

Blomberg KE, Boucheron N, Lindvall JM, Yu L, Raberger J, Berglöf A, Ellmeier W, Smith CE. Transcriptional signatures of Itk-deficient CD3+, CD4+ and CD8+ T-cells. BMC Genomics. 2009 May 18;10:233. PubMed PMID: 19450280; PubMed Central PMCID: PMC2689280.

Bruce S, Hannula-Jouppi K, Puoskari M, Fransson I, Simola KO, Lipsanen-Nyman M, Kere J. Submicroscopic genomic alterations in Silver-Russell syndrome and Silver-Russell-like patients. J Med Genet. 2009 Sep 14. [Epub ahead of print]PubMed PMID: 19752157.

Brynedal B, Khademi M, Wallström E, Hillert J, Olsson T, Duvefelt K. Gene expression profiling in multiple sclerosis: a disease of the central nervous system, but with relapses triggered in the periphery? Neurobiol Dis. 2010 Mar;37(3):613-21. Epub 2009 Nov 26. PubMed PMID: 19944761.

Brynedal B, Wojcik J, Esposito F, Debailleul V, Yaouanq J, Martinelli-Boneschi F, Edan G, Comi G, Hillert J, Abderrahim H. MGAT5 alters the severity of multiple sclerosis. J Neuroimmunol. 2010 Mar 30;220(1-2):120-4. Epub 2010 Feb 1. PubMed PMID: 20117844.

Buchanan L, Durand-Dubief M, Roguev A, Sakalar C, Wilhelm B, Strålfors A, Shevchenko A, Aasland R, Shevchenko A, Ekwall K, Francis Stewart A. The Schizosaccharomyces pombe JmjC-protein, Msc1, prevents H2A.Z localization in centromeric and subtelomeric chromatin domains. PLoS Genet. 2009 Nov;5(11):e1000726. Epub 2009 Nov 13. PubMed PMID: 19911051; PubMed Central PMCID: PMC2770259.

Burgos CM, Uggla AR, Fagerström-Billai F, Eklöf AC, Frenckner B, Nord M. Gene expression analysis in hypoplastic lungs in the nitrofen model of congenital diaphragmatic hernia. J Pediatr Surg. 2010 Jul;45(7):1445-54. PubMed PMID:20638522

Butura A, Nilsson K, Morgan K, Morgan TR, French SW, Johansson I, Schuppe-Koistinen I, Ingelman-Sundberg M. The impact of CYP2E1 on the development of alcoholic liver disease as studied in a transgenic mouse model. J Hepatol. 2009 Mar;50(3):572-83. Epub 2008 Dec 25. PubMed PMID: 19157621.

Byrnes A, Jacks A, Dahlman-Wright K, Evengard B, Wright FA, Pedersen NL, Sullivan PF. Gene expression in peripheral blood leukocytes in monozygotic twins discordant for chronic fatigue: no evidence of a biomarker. PLoS One. 2009 Jun 5;4(6):e5805. PubMed PMID: 19503787; PubMed Central PMCID: PMC2688030.

Cardell LO, Andersson M, Cervin A, Davidsson A, Hellgren J, Holmström M, Lundblad L, Stierna P, Stjärne P, Adner M; SRFA study group. Genes regulating molecular and cellular functions in noninfectious nonallergic rhinitis. Allergy. 2009 Sep;64(9):1301-8. Epub 2009 Apr 27. PubMed PMID: 19432938.

Dahdouh F, Anthoni H, Tapia-Páez I, Peyrard-Janvid M, Schulte-Körne G, Warnke A, Remschmidt H, Ziegler A, Kere J, Müller-Myhsok B, Nöthen MM, Schumacher J, Zucchelli M. Further evidence for DYX1C1 as a susceptibility factor for dyslexia. Psychiatr Genet. 2009 Apr;19(2):59-63. PubMed PMID: 19240663.

Dahlman I, Mejhert N, Linder K, Agustsson T, Mutch DM, Kulyte A, Isaksson B, Permert J, Petrovic N, Nedergaard J, Sjölin E, Brodin D, Clement K, Dahlman-Wright K, Rydén M, Arner P. Adipose tissue pathways involved in weight loss of cancer cachexia. Br J Cancer. 2010 May 11;102(10):1541-8. Epub 2010 Apr 20. PubMed PMID: 20407445; PubMed Central PMCID: PMC2869165.

Delp G, Gradin T, Ahman I, Jonsson LM. Microarray analysis of the interaction between the aphid Rhopalosiphum padi and host plants reveals both differences and similarities between susceptible and partially resistant barley lines. Mol Genet Genomics. 2009 Mar;281(3):233-48. Epub 2008 Dec 16. PubMed PMID: 19085010.

Deneberg S, Grövdal M, Karimi M, Jansson M, Nahi H, Corbacioglu A, Gaidzik V, Döhner K, Paul C, Ekström TJ, Hellström-Lindberg E, Lehmann S. Gene-specific and global methylation patterns predict outcome in patients with acute myeloid leukemia. Leukemia. 2010 May;24(5):932-41. Epub 2010 Mar 18. PubMed PMID: 20237504

Djupedal I, Kos-Braun IC, Mosher RA, Söderholm N, Simmer F, Hardcastle TJ, Fender A, Heidrich N, Kagansky A, Bayne E, Wagner EG, Baulcombe DC, Allshire RC, Ekwall K. Analysis of small RNA in fission yeast; centromeric siRNAs are potentially generated through a structured RNA. EMBO J. 2009 Dec 16;28(24):3832-44. Epub . PubMed PMID: 19942857; PubMed Central PMCID: PMC2797062.

Durand-Dubief M, Persson J, Norman U, Hartsuiker E, Ekwall K. Topoisomerase I regulates open chromatin and controls gene expression in vivo. EMBO J. 2010 Jul 7;29(13):2126-34. Epub 2010 Jun 4. PubMed PMID: 20526281; PubMed Central PMCID:PMC2905247.

Ekstrand J, Razuvaev A, Folkersen L, Roy J, Hedin U. Tissue factor pathway inhibitor-2 is induced by fluid shear stress in vascular smooth muscle cells and affects cell proliferation and survival. J Vasc Surg. 2010 Jul;52(1):167-75. PubMed PMID: 20537494.

Folkersen L, Diez D, Wheelock CE, Haeggström JZ, Goto S, Eriksson P, Gabrielsen A. GeneRegionScan: a Bioconductor package for probe-level analysis of specific, small regions of the genome. Bioinformatics. 2009 Aug 1;25(15):1978-9. Epub 2009 Apr 27. PubMed PMID: 19398447; PubMed Central PMCID: PMC2712334.

Halle M, Gabrielsen A, Paulsson-Berne G, Gahm C, Agardh HE, Farnebo F, Tornvall P. Sustained inflammation due to nuclear factor-kappa B activation in irradiated human arteries. J Am Coll Cardiol. 2010 Mar 23;55(12):1227-36. PubMed PMID: 20298930.

Hultcrantz M, Jacobson S, Hill NJ, Santamaria P, Flodström-Tullberg M. The target cell response to cytokines governs the autoreactive T cell repertoire in the pancreas of NOD mice. Diabetologia. 2009 Feb;52(2):299-305. Epub 2008 Nov 25. PubMed PMID: 19031069.

Johnsson A, Durand-Dubief M, Xue-Franzén Y, Rönnerblad M, Ekwall K, Wright A. HAT-HDAC interplay modulates global histone H3K14 acetylation in gene-coding regions during stress. EMBO Rep. 2009 Sep;10(9):1009-14. Epub 2009 Jul 24. PubMed PMID: 19633696; PubMed Central PMCID: PMC2750064.

Khorosjutina O, Wanrooij PH, Walfridsson J, Szilagyi Z, Zhu X, Baraznenok V,Ekwall K, Gustafsson CM. A chromatin remodeling protein is a component of fission yeast mediator. J Biol Chem. 2010 Jul 9. [Epub ahead of print] PubMed PMID:20622008

Khoshnoud R, He Q, Sylván M, Khoshnoud A, Ivarsson M, Fornander T, Bergh J, Frisell J, Rutqvist LE, Skog S. The impact of RNA standardization and heterogeneous gene expression on the results of cDNA array of human breast carcinoma. Int J Mol Med. 2010 May;25(5):735-41. PubMed PMID: 20372817.

Lantermann A, Strålfors A, Fagerström-Billai F, Korber P, Ekwall K. Genome-wide mapping of nucleosome positions in Schizosaccharomyces pombe. Methods. 2009 Jul;48(3):218-25. Epub 2009 Feb 20. PubMed PMID: 19233281.

Lantermann AB, Straub T, Strålfors A, Yuan GC, Ekwall K, Korber P. Schizosaccharomyces pombe genome-wide nucleosome mapping reveals positioning mechanisms distinct from those of Saccharomyces cerevisiae. Nat Struct Mol Biol. 2010 Feb;17(2):251-7. Epub 2010 Jan 31. PubMed PMID: 20118936.

Csöregh Nord L, Sundqvist J, Andersson E, Fried G. Analysis of Oestrogen Regulation of Alpha-, Beta- and Gamma-Secretase Gene and Protein Expression in Cultured Human Neuronal and Glial Cells. Neurodegener Dis. 2010 Jun 4. [Epub ahead of print]

Ansell A, Jerhammar F, Ceder R, Grafström R, Grénman R, Roberg K. Matrix metalloproteinase-7 and -13 expression associate to cisplatin resistance in head and neck cancer cell lines. Oral Oncol. 2009 Oct;45(10):866-71. Epub 2009 May 12.

Liu Y, Gao H, Marstrand TT, Ström A, Valen E, Sandelin A, Gustafsson JA, Dahlman-Wright K. The genome landscape of ERalpha- and ERbeta-binding DNAregions. Proc Natl Acad Sci U S A. 2008 Feb 19;105(7):2604-9. Epub 2008 Feb 13. PubMed PMID: 18272478; PubMed Central PMCID: PMC2268183.

Mejhert N, Galitzky J, Pettersson AT, Bambace C, Blomqvist L, Bouloumié A, Frayn KN, Dahlman I, Arner P, Rydén M. Mapping of the fibroblast growth factors in human white adipose tissue. J Clin Endocrinol Metab. 2010 May;95(5):2451-7. Epub 2010 Mar 12. PubMed PMID: 20228166.

Mesas-Burgos C, Nord M, Didon L, Eklöf AC, Frenckner B. Gene expression analysis after prenatal tracheal ligation in fetal rat as a model of stimulated lung growth. J Pediatr Surg. 2009 Apr;44(4):720-8. PubMed PMID: 19361631.

Patrakka J, Tryggvason K. Molecular make-up of the glomerular filtration barrier. Biochem Biophys Res Commun. 2010 May 21;396(1):164-9. Review. PubMed PMID: 20494132.

Persson AK, Gebauer M, Jordan S, Metz-Weidmann C, Schulte AM, Schneider HC, Ding-Pfennigdorff D, Thun J, Xu XJ, Wiesenfeld-Hallin Z, Darvasi A, Fried K, Devor M. Correlational analysis for identifying genes whose regulation contributes to chronic neuropathic pain. Mol Pain. 2009 Feb 19;5:7. PubMed PMID: 19228393; PubMed Central PMCID: PMC2649910.

Persson J, Ekwall K. Chd1 remodelers maintain open chromatin and regulate the epigenetics of differentiation. Exp Cell Res. 2010 May 1;316(8):1316-23. Epub 2010 Mar 6. Review. PubMed PMID: 20211173.

Risling M, Plantman S, Angeria M, Rostami E, Bellander BM, Kirkegaard M, Arborelius U, Davidsson J. Mechanisms of blast induced brain injuries, experimental studies in rats. Neuroimage. 2010 May 21. [Epub ahead of print] PubMed PMID: 20493951.

Stenberg P, Lundberg LE, Johansson AM, Rydén P, Svensson MJ, Larsson J. Buffering of segmental and chromosomal aneuploidies in Drosophila melanogaster. PLoS Genet. 2009 May;5(5):e1000465. Epub 2009 May 1. PubMed PMID: 19412336; PubMed Central PMCID: PMC2668767.

Sun Y, He L, Takemoto M, Patrakka J, Pikkarainen T, Genové G, Norlin J, Truvé K, Tryggvason K, Betsholtz C. Glomerular transcriptome changes associated with lipopolysaccharide-induced proteinuria. Am J Nephrol. 2009;29(6):558-70. Epub 2009 Jan 9. PubMed PMID: 19136817.

Thang PH, Ruffin N, Brodin D, Rethi B, Cam PD, Hien NT, Lopalco L, Vivar N, Chiodi F. The role of IL-1beta in reduced IL-7 production by stromal and epithelial cells: a model for impaired T-cell numbers in the gut during HIV-1 infection. J Intern Med. 2010 Aug;268(2):181-93. Epub 2010 Apr 20. PubMed PMID: 20497296

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